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Development of a Loop-Mediated Isothermal Amplification Assay for Rapid Detection of Subgroup J Avian Leukosis Virus ▿

机译:快速检测亚组J型禽白血病病毒的环介导等温扩增测定的开发▿

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摘要

Infection of breeder flocks in China with subgroup J avian leukosis virus (ALV-J) has increased recently. In this study, we have developed a loop-mediated isothermal amplification (LAMP) assay for rapid detection of ALV-J from culture isolates and clinical samples. The ALV-J-specific LAMP assay efficiently amplified the target gene within 45 min at 63°C using only a simple laboratory water bath. To determine the specificity of the LAMP assay, various subgroup ALVs and other related viruses were detected. A ladder pattern on gel electrophoresis was observed for ALV-J isolates but not for other viruses. To evaluate the sensitivities of the LAMP assay and conventional PCR, the NX0101 isolate plasmid DNA was amplified by them. The detection limit of the LAMP assay was 5 target gene copies/reaction, which was up to 20 times higher than that of conventional PCR. To evaluate the application of the LAMP assay for detection of ALV-J in clinical samples, 49 samples suspected of ALV infection from breeder flocks were tested by the LAMP assay and PCR. Moreover, virus isolation from these samples was also performed using cell culture. The positive-sample ratios were 21/49 (43%) by conventional PCR, 26/49 (53%) by the LAMP assay, and 19/46 (41%) by virus isolation. Additionally, a positive LAMP reaction can be visually ascertained by the observation of turbidity or a color change after addition of SYBR green I dye. Consequently, the LAMP assay is a simple, rapid, and sensitive diagnostic method and can potentially be developed for rapid detection of ALV-J infection in the field.
机译:在中国,种鸡群被亚禽类白血病病毒(ALV-J)感染的情况有所增加。在这项研究中,我们开发了一种环介导的等温扩增(LAMP)分析法,用于从培养分离物和临床样品中快速检测ALV-J。仅在简单的实验室水浴中,ALV-J特异性LAMP测定法即可在63°C的45分钟内有效扩增靶基因。为了确定LAMP测定的特异性,检测了各种亚组ALV和其他相关病毒。对于ALV-J分离株,在凝胶电泳上观察到了梯形图,但对于其他病毒则没有。为了评估LAMP测定法和常规PCR的敏感性,将NX0101分离的质粒DNA进行了扩增。 LAMP检测的检测限为5个靶基因拷贝/反应,比常规PCR的检测限高20倍。为了评估LAMP测定法在临床样品中检测ALV-J的应用,通过LAMP测定法和PCR检测了49个怀疑来自种鸡群的ALV感染的样品。此外,还使用细胞培养从这些样品中分离出病毒。常规PCR的阳性样品比率为21/49(43%),通过LAMP分析的阳性样品比率为26/49(53%),通过病毒分离为19/46(41%)。另外,通过观察加入SYBR green I染料后的浊度或颜色变化,可以目视确定LAMP反应阳性。因此,LAMP测定法是一种简单,快速且灵敏的诊断方法,可以潜在地开发用于在现场快速检测ALV-J感染。

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